Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVYKVIDIIGTSPTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDSAGKITYRIKLEVSFKMRPAQPR
2VYX Chain:K ((4-66))
--VYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRL------
General information:
TITO was launched using:
RESULT:
Template:
2VYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19315 for 406 contacts (-47.6/contact) +
2D Compatibility (PS) -7128 + (NN) -5267 + (LL) 364
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -37996.0 ( -93.59 by residue)
QMean score : 0.693
(partial model without unconserved sides chains):
PDB file :
Tito_2VYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VYX-query.scw
PDB file :
Tito_Scwrl_2VYX.pdb
: