Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTAGSDLDDFRGLLAKAFDERVVAWTAEAEAQERFP--RQLIEHLGVCGVFDAKWA-------TDARPDVGKLVELAFALGQLASAGI--GVGVSLHD-SAIAILRRFGKSDYLRDICDQAIRGAAVLCIGASEESGGSDLQIVETEIRSRDGGFEVRGVKKFVSLSPIADHIMVVARSVDHDPT--SRHGNVAVVAVPAA--QVSVQTPYRKVGAGPLDTAAVCI-DTWVPADALVARAGTGLAAISWGLAHERMSIAGQIAASCQRAIGITLARMMSRRQFGQTLFEHQALRLRMADLQARVDLLRYALHGIA---EQGRLELRTAAAVKVTAARLGEEVISECMHIFGGAGYLVDETTLGKWWRDMKLARVGGGTDEVLWELVAAGMTPDHDGYAAVVGASKA |
| 1IVH Chain:A ((13-392)) | --LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEI-------SRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKT---DLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYI-NDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227085 for 3149 contacts (-72.1/contact) +
2D Compatibility (PS) -39897 + (NN) -22962 + (LL) 2044
1D Compatibility (HY) -17600 + (ID) 4200
Total energy: -309700.0 ( -98.35 by residue)
QMean score : 0.464
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