Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASLLNARTAVITGGAQGLGLAIGQRFVAEGARVVLGDVNLEATEVAAKRLGGDDVA--LAVRCDVTQADDVDILIRTAVERFG-GLDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAA-AIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGGRFI
2PD6 Chain:B ((5-256))
----LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLG-----NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLF-
General information:
TITO was launched using:
RESULT:
Template:
2PD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128983 for 2094 contacts (-61.6/contact) +
2D Compatibility (PS) -25269 + (NN) -1098 + (LL) 716
1D Compatibility (HY) -16800 + (ID) 5200
Total energy: -176634.0 ( -84.35 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2PD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PD6-query.scw
PDB file :
Tito_Scwrl_2PD6.pdb
: