Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
2C9D Chain:G ((14-160))
-------DASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
General information:
TITO was launched using:
RESULT:
Template:
2C9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108802 for 1161 contacts (-93.7/contact) +
2D Compatibility (PS) -16569 + (NN) -11441 + (LL) 176
1D Compatibility (HY) -18000 + (ID) 7350
Total energy: -161986.0 ( -139.52 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_2C9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C9D-query.scw
PDB file :
Tito_Scwrl_2C9D.pdb
: