Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMVNTTTRLSDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDG---------------ARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPR----------PNPRRVVIEVQIERVLGSADLLDRA
2FUR Chain:A ((18-167))
------ASYSDEDLVAMLDRNFTCTVSFID-GGIPYAIPMMLASEGK--TIYLHGSMKSRIYGILKTGQLIAISLLEINGIVLAKEIKNNSINYVSALIFGRPYEIDDTEKKIEVFRLLTEKLVKGRWDNSIKPSYEDLNGVFVFAVKPETFSMKARTG---
General information:
TITO was launched using:
RESULT:
Template:
2FUR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32752 for 850 contacts (-38.5/contact) +
2D Compatibility (PS) -13657 + (NN) -5079 + (LL) 1132
1D Compatibility (HY) -400 + (ID) 800
Total energy: -51556.0 ( -60.65 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2FUR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FUR-query.scw
PDB file :
Tito_Scwrl_2FUR.pdb
: