Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLRPKSLRDAMVED--
2GPF Chain:A ((1-72))
-MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKAAG
General information:
TITO was launched using:
RESULT:
Template:
2GPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16193 for 381 contacts (-42.5/contact) +
2D Compatibility (PS) -7987 + (NN) -6810 + (LL) 208
1D Compatibility (HY) -5200 + (ID) 1550
Total energy: -37532.0 ( -98.51 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_2GPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GPF-query.scw
PDB file :
Tito_Scwrl_2GPF.pdb
: