Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MTVRAEHCRGAGGCDECPSVMPEHPTALFHDVAAIAL---AQPGAEPGAMMGFPCRPALLPHLSRAVMRCVRTRSASTSLGVSVIAGQLPAAGSRHRLGAPCRHVRWWLASDGHWGMVS--YIPTALNVSMGGI-VGWRCVP
1Q77 Chain:A ((1-138))
SNAMKVLLVLTDAY----SDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT-------GSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPSAYLCKVIDGLNLASLIVK
General information:
TITO was launched using:
RESULT:
Template:
1Q77.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64434 for 851 contacts (-75.7/contact) +
2D Compatibility (PS) -12845 + (NN) 2292 + (LL) 836
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -79901.0 ( -93.89 by residue)
QMean score : -0.031
(partial model without unconserved sides chains):
PDB file :
Tito_1Q77.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q77-query.scw
PDB file :
Tito_Scwrl_1Q77.pdb
: