Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGS-------GDDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVADRNSGAGPKDPSPAGG
1JD1 Chain:A ((6-128))
-----TPVICESAPAAAASYSHAMKVNNLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPL-GVDMEMEAIAAER--------------------
General information:
TITO was launched using:
RESULT:
Template:
1JD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58169 for 876 contacts (-66.4/contact) +
2D Compatibility (PS) -12967 + (NN) -5347 + (LL) -236
1D Compatibility (HY) -8000 + (ID) 1700
Total energy: -86419.0 ( -98.65 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_1JD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JD1-query.scw
PDB file :
Tito_Scwrl_1JD1.pdb
: