Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELD-QARSLDDLAER------------PALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGI---------DGVYAACDADGRVIALLRDEGS-----------RTRSVAVLRPATMHPG |
| 3U28 Chain:A ((56-347)) | --YISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-----------------KDEKDLGRSLENLTGALFQRPP-----KRQ-----------------LRVRTIYESNLIEFDNK--RNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYP- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U28.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161408 for 2047 contacts (-78.9/contact) +
2D Compatibility (PS) -26118 + (NN) -4523 + (LL) 2944
1D Compatibility (HY) -11200 + (ID) 3550
Total energy: -203855.0 ( -99.59 by residue)
QMean score : 0.457
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