Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRARPLTLLTALAAVTLVVVAGCEARVEAEAYSAADRISSRPQARPQPQPVELLLRAITPPRAPAASPNVGFGELPTRVRQATDEAAAMGATLSVAVLDRATGQLVSNGNTQIIATASVAKLFIADDLLLAEAEGKVTLSP------------------------EDHHALDVMLQSSDDGAAERFWSQDGGNAVVTQVARRYGLRSTAPPS------DGRWWNTISSAPDLIRYYDMLLDGSGGLPLDRAAVIIADLAQSTPTGIDGYPQRFGIPDGLY-AEPVAVKQGW-MCCIGSSWMHLSTGVI-GPER-RYIMVIESLQPADDATARATITQAVRTMFPNGRI |
| 4YFM Chain:A ((16-251)) | -------------------------------------------------------------------------MAPDELASLEKD---FGGRIGVYALDTGSGDTVGHRADERFLMCSTVKTFIVSAILRRRLSEPGLLDQRIQYTQSDVLEWAPITSQHVSTGMTVSELCDATLRYSDNTGANLLITQLGGPKETEKFVRSLGDNVTRMDRTEVQLNIPDGDLDTSTPQQLVANLRRLVLDE-GLDSRGRDLLTDWLKRN------TTG-DQSIRAAVPAGWTVADKTGGGFKG-----ETNDIAVIWPPGRAPIVMAVLTVPE----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YFM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100701 for 1671 contacts (-60.3/contact) +
2D Compatibility (PS) -22623 + (NN) -12599 + (LL) 7724
1D Compatibility (HY) -3200 + (ID) 2000
Total energy: -133399.0 ( -79.83 by residue)
QMean score : 0.485
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