Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDIVTIFPACLDPLRQ-SLPGKAIESGLVDLNVHDLRRWTHDVHHSVDDAPYGGGPGMVMKAPVWGEAL---DEICSSETLLIVPTPAGVLFTQATAQRWTTESHLVFACGRYEGIDQRVVQDAARRMRVEEVSIGDYVLPGGESAAVVMVEAVLRLLAGVLGNPASHQDDSHSTGLDGLLEGPSYTRPASWRGLDVPEVLLSGDHARIAAWRREVSLQRTRERRPDLSHPD
4YQL Chain:A ((9-231))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEID----EEWSIGDYVLTGGELPAMTLIDAVARFIPGVLG--------SFA---DGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPEL----
General information:
TITO was launched using:
RESULT:
Template:
4YQL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132957 for 1503 contacts (-88.5/contact) +
2D Compatibility (PS) -22874 + (NN) -8341 + (LL) 364
1D Compatibility (HY) -20400 + (ID) 4500
Total energy: -188708.0 ( -125.55 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_4YQL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YQL-query.scw
PDB file :
Tito_Scwrl_4YQL.pdb
: