Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQ-GGIVIFVGNVRDH-NAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKE-FSSTGAEWVGDRP
2OMD Chain:B ((4-142))
-------GMIPRVYLGHEWFGAERILSEYQVPEDCGAQVLFLGIPRNAPEDGGNIEALEYEAYPEMAIKEMEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFKEGKGEWV----
General information:
TITO was launched using:
RESULT:
Template:
2OMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97981 for 990 contacts (-99.0/contact) +
2D Compatibility (PS) -14591 + (NN) -7837 + (LL) 616
1D Compatibility (HY) -8800 + (ID) 2350
Total energy: -130943.0 ( -132.27 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2OMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OMD-query.scw
PDB file :
Tito_Scwrl_2OMD.pdb
: