Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANEPAIGAIDRLQRSSRDVTTLPAVISRWLSSVLPGGAAPEVTVESGVDSTGMSSE-TIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPDVMPYTFGDNWFADAPAERQRQLQDATVAALATLHSIPNAQNTFSFLTQGRTSDTTLHRHFNWVRSWYDFAVE--GIGRSPLLERTFEWLQSHWPDDAAAREPVLLWGDARVGNVLYRDFQPVAVLDWEMVALGPRELDVAWMIFAHRVFQELAGLATLPGLPEVMREDDVRATYQALTGVELGDLHWFYVYSGVMWACVFMRTGARRVHFGEIEKPDDVESLFYHAGLMKHLLGEEH |
| 4GKH Chain:A ((19-269)) | -----------------------------NLDADLYG---YRWA----RDNVGQSGATIYRLYGKPN------APELFLKHGKGSV------ANDVTDEMVRLNWLTA--FMPLPTIKHFIRT---PDDAWLLTTAIPGKTAFQV--------L-EEYP-DSGENIVDALAVFLRRLHSIPVCNCPFNSDR-----VFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPF---SPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEF----------SPSLQ---KRLFQKYGID-NPDMNKLQFHLMLD--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115781 for 1882 contacts (-61.5/contact) +
2D Compatibility (PS) -26051 + (NN) -4425 + (LL) 8032
1D Compatibility (HY) -8400 + (ID) 2000
Total energy: -148625.0 ( -78.97 by residue)
QMean score : 0.295
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