Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALA-CVDGHGSVLMPCGRCRQVLLEHGGSELLI----DHPVRPRRLGDLLPDAFGLDDLPRERR
2FR6 Chain:D ((21-144))
-----------SSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQK---
General information:
TITO was launched using:
RESULT:
Template:
2FR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77859 for 862 contacts (-90.3/contact) +
2D Compatibility (PS) -13417 + (NN) -7698 + (LL) 800
1D Compatibility (HY) -7200 + (ID) 2450
Total energy: -107824.0 ( -125.09 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_2FR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FR6-query.scw
PDB file :
Tito_Scwrl_2FR6.pdb
: