Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAM-FSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVD----VDQAVAFAAAHGLCLAGG
2J8K Chain:A ((15-195))
-------VPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEGG
General information:
TITO was launched using:
RESULT:
Template:
2J8K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166452 for 1593 contacts (-104.5/contact) +
2D Compatibility (PS) -17549 + (NN) 3621 + (LL) 776
1D Compatibility (HY) -4800 + (ID) 2100
Total energy: -186504.0 ( -117.08 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_2J8K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J8K-query.scw
PDB file :
Tito_Scwrl_2J8K.pdb
: