Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MAVL----------PACRLG--LVVCVATAVITA---TMVLATPSYACACGAAVTAHGSQATLNH---------EVALLHWDGTTETIVMQLAMNADTDNVAL-------VVPTPTPAIVTTADQSTFGELDTLSAPLIEHQRHWSLRRG---VGASGPQEAAARAPH-----VLNQVRLGPLEATTLTGGDLSGLQTWLS-DNGYAIRPAVSAALDPYVRDGWAFVAIRLTSTDLIVGGL----DPVRMTFRS------SRLVYPMRLSVAAQEPQHVTIFTLSDHRQQR-----TDADAATQTTHVRFAGDMSTAVRDPLLRE-----LIGNHGSYLTKVEVDIYQTSRISSDFTFGNAPNDDPYRQVVTVYDDVALPPLLLVVVSAIAVGAAGGAVVVVLRRRRRAHTG |
| 4MND Chain:A ((40-457)) | LMKAVILAAGLGGGVPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVEDRFILTMGDHVYSQQFIEKAVRGEGVIADREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDDSIFEHAEKLRDREEIPLSEIVKLARLPVTYVDG------ELWMDVDTKEDVRRANRALVSAAVGDGFISRKINRKISTRISAAIVNKVNPNQMTLISFLVGAFSALASFFSIPLAGLLYQFSSILDGCDGEIARASLKMSKKGGYVDSILDRFVDFLFLAIIALLYPKTATVAMFAIFGSVMVSYTSEKYKAEFGESIRVLNYIPGKRDER-IFLIMIFCLLSAISLQWIFWMFLFVAAISLTRVVVTLLAVLVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -104478 for 2550 contacts (-41.0/contact) +
2D Compatibility (PS) -35674 + (NN) -2979 + (LL) 24
1D Compatibility (HY) -18400 + (ID) 2900
Total energy: -164407.0 ( -64.47 by residue)
QMean score : 0.073
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