Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQTTPAVRTFQDLILALQNYWAEQGCVVLQPYDMEVGAGTFHTATFLRAIGPETWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVLKPNPENFQEL----YLGSLKAIGIDPLVHDIR---------------------FVEDNWESPTL-----GAWGLGWEIWLNGMEV----TQFTYFQQVGGIECYPVTGEITYGLERL----AMYLQGVDSVYDLVWTDG--PFGKVTYGDVFHQ------------NEVEQSTFNFEHANVPKLFELF---------------DFYESEANRLIALELPL---PTYEMVLKASHTFNLLDARRAISVTERQR-----YILRVRTLAR--------AVAQSYLQARAR----------------LGFPMATP-------ELRDE-----------VLAKLKEAE------------------------------- |
| 4P42 Chain:A ((3-470)) | ------DTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGANTHLSTFSFTKVDVG-QQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTIILDIISNYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEALV-YEHPGQELEIELFDEDPDKDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLRLEWLTLMPNASNLDKVLTDIGLSSALLILYLDSARNLPSSSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPKRQDLEVEVRDEQHQCSLGNLKVPLSQLLTSEDMTVSQRFQLSNSGPNSTIKMKIALRVLHLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P42.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -32277 for 1708 contacts (-18.9/contact) +
2D Compatibility (PS) -31683 + (NN) 10117 + (LL) 276
1D Compatibility (HY) -15200 + (ID) 3600
Total energy: -72367.0 ( -42.37 by residue)
QMean score : 0.007
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