Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLF---GFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDPAGFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQ-ASGMVMDHTQDCDRYAQLVG
3S6I Chain:A ((39-162))
-------------------YRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMR----ACGF--SARKIDSLKSIAEATISG--LIPTKEEAE-------------RLS-----NEELIERLT--QIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYR
General information:
TITO was launched using:
RESULT:
Template:
3S6I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56974 for 879 contacts (-64.8/contact) +
2D Compatibility (PS) -13483 + (NN) -12115 + (LL) 2584
1D Compatibility (HY) 2000 + (ID) 600
Total energy: -78588.0 ( -89.41 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_3S6I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S6I-query.scw
PDB file :
Tito_Scwrl_3S6I.pdb
: