Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNPRLAACQALAAVLAGRASLSGALPPQLDKVAPRDRGLTQELAFGAARWQPRLQALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKGWAKGVLNAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWPEQLDALCAANNAHPPMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAP-RDVRELPGFAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQRLGLQA-SLVAADARATGEWW--DGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGARELDLPGP-------WGMKQPHGRQLLPQVEGHDGFYYAKLIKISAR |
3AJD Chain:A ((9-274)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------KMQFIRVNTLKINPEVLKKRLENKGVVLEKT-FLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCS----------------EEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPP---NEPFFIAKLRKI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -94198 for 2004 contacts (-47.0/contact) +
2D Compatibility (PS) -26590 + (NN) -15753 + (LL) 14384
1D Compatibility (HY) -15200 + (ID) 3200
Total energy: -140557.0 ( -70.14 by residue)
QMean score : 0.451
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