Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKANGVPAYTLEIVDKGSVTDKKVVGTCDGGTKEIVYQRG
2KP0 Chain:A ((1-33))
-------------------------------------ACNDRDCSLDCIMKGYN-----FGKCVRGSCQCRRTSG
General information:
TITO was launched using:
RESULT:
Template:
2KP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3645 for 172 contacts (-21.2/contact) +
2D Compatibility (PS) -3767 + (NN) -2661 + (LL) 4128
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -7545.0 ( -43.87 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_2KP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KP0-query.scw
PDB file :
Tito_Scwrl_2KP0.pdb
: