Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKG-------ELRLETRDGAQSTRVLEGEAAGCLMNIIHRLIAGAEPVEALLFHAGVEGMPVGLGERGEMPDA---
2BVB Chain:A ((1-137))
KTEIHGDSTKATLEEGQQLTLTFISTKLDVAVGSCHSLVANFLDG-----FLKFQTGSNSAFDVVEVEEPAGPAVLTIGLGHKGRLAVVLDYTRLNAALGSAAYVVEDSGCS------------SSEEVSFQGVGSGATLVVTTLGESPTAVSA
General information:
TITO was launched using:
RESULT:
Template:
2BVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10058 for 886 contacts (-11.4/contact) +
2D Compatibility (PS) -12919 + (NN) 2289 + (LL) 1124
1D Compatibility (HY) 400 + (ID) 1150
Total energy: -20314.0 ( -22.93 by residue)
QMean score : 0.132
(partial model without unconserved sides chains):
PDB file :
Tito_2BVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BVB-query.scw
PDB file :
Tito_Scwrl_2BVB.pdb
: