Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVGRRAVRVLCYVPPMP----RRLRHPLADLRLPRWVPCLA---LLALSG-CSTVSYYGQLASGQFALLRAREPAAAVIADPQRDARLRERLAKAEKARQFASERLGLPDNRSYRLYADIGRPYVVWNVFATP-ELSLQPVTHCFPIAGCVAYRGYYSEAAARAEAARQRALGDDVYVGGVQAYSTLGWFDDPILSSMLRWDDERLATLIFHELAHQKFY------LRDDTAFNESFATFVEQEGTRQWREYRGLPPADGREEKRREQFTA--LVLASRARLEALYA--------GPLD--DAAKRAGKAA-EFQRLRREYAALSQREWGGESPFKA-WIDAPFNNAKLLPFGLYDQWVAAFAVLFRQ-VG-----GNWPAFYARVRALGQLPLAERQAALQRLAAAAP |
| 3CIA Chain:A ((149-458)) | ---HARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNE--RDGDYFFSMPQAIPPYLIAIGVGDLEFKAMSH-QTGIYAESYILDAA-----------VAEFD-DTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGMENP----RLSFIT----------PTVV--------------------------------AGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRA--VM-------EQALGAQDLNAEILELDASDTQLYIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRER--FDAFVLEYFDSHAFQ---S----------LGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPTSNAFKVIDK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CIA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -30686 for 2074 contacts (-14.8/contact) +
2D Compatibility (PS) -28081 + (NN) -4385 + (LL) 5960
1D Compatibility (HY) -400 + (ID) 1750
Total energy: -59342.0 ( -28.61 by residue)
QMean score : 0.123
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