Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIRSYQGKTPLLGERV--FVDPSAVLVGDIEIGADSSVWPLVVIRGDMHRIRIGQRSSIQDGSVLHITHAGPFNPDGFPLSIGDEVTVGHKVLLHGCSIGNRVLVGMGSIVMDGAVIEDEVILGAGSLVPPGKVLESGFLYVGSPAKKARPLSDKERGFFAYTAGNYVKLKDLHIAEDYHA
4N27 Chain:F ((21-183))
MPIYAYNGHKPQFADRESNWIAPDATLIGKVVVGENAGFWFGAVLRGDNEPITIGADTNVQEQTIMHTD-------IGFPLTIGAGCTIGHRAILHGCTIGENTLIGMGAIVLNGAKVGKNCLIGAGTLVKEGMEIPDNSLVVGSPARVLRQLDDAAVEKLRASAKHYVERGHSFMRGMEPA
General information:
TITO was launched using:
RESULT:
Template:
4N27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133996 for 1368 contacts (-98.0/contact) +
2D Compatibility (PS) -18220 + (NN) -11696 + (LL) -212
1D Compatibility (HY) -13600 + (ID) 3100
Total energy: -180824.0 ( -132.18 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4N27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N27-query.scw
PDB file :
Tito_Scwrl_4N27.pdb
: