Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MLKKLSPIFS---NITGVV------RYQDLAYVASVSDEIQEQNIA--HSYVTEWDCGTWCV------------AGEDDDMLPWEI---VSATVVHEPVEQALFLGARGQVFCMGSGDIHEEQLPDGDD--------AIGGRGNMRGVACIDGVAYACGMDRQVYRRFDENDWRAIDTGARPPAGSEAVVGFEAIG---------------------GFGAREIYAVGWDGEIWQYDGKRW--------QPRESPTNLIL----------------TAICCAEDGSVYACGQAGTLLRGRNDHWEIIAQDDVDEDLWSLAWFDG----ALYVSSATAVYTLVGGHLKEVDFGD----EQPQRCFHLSAADGVLWSIAAKDIFSFDGQQWTRID |
| 1A12 Chain:A ((21-421)) | KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYT-LGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A12.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95584 for 2473 contacts (-38.7/contact) +
2D Compatibility (PS) -32007 + (NN) -7431 + (LL) 100
1D Compatibility (HY) -5600 + (ID) 2100
Total energy: -142622.0 ( -57.67 by residue)
QMean score : 0.219
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