Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLAIPMPERPRRARGRLQLLAIIGLVVGPMLLASAMYKWNFWVPQGRSYSGALIGNGQTPADLGVQGRSQGEQWQLLVTAPGTCGEDCQQLVYLARQINIALGREASRAGHALAASGELPADFANLVRQDYPRLQRYGLDPALYDKAGGGERPLLWVVDPHGNLVLRYDAKANGKKLLKDVQLLLKLSHIG---
2JKG Chain:A ((5-169))
YSWDSYLNDRL-LATNQVSGAGLASEEDGVVYACVA-------------------QGEESDPNFDKWSLFYKEDYDIEVEDEN--GTKTTKTINEGQTILVVFNEGYAPDGVWLG-----GTKYQFINIERDLEFEGYNFDVATCAKLKGG---LHLVKVPGGNILVVLYDEEKEQDRGNSKIAALTFAKELAES
General information:
TITO was launched using:
RESULT:
Template:
2JKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57928 for 1244 contacts (-46.6/contact) +
2D Compatibility (PS) -17178 + (NN) -3371 + (LL) 1712
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -80315.0 ( -64.56 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_2JKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JKG-query.scw
PDB file :
Tito_Scwrl_2JKG.pdb
: