Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRLPANLGRLLPALCLGVLLSACSTFGQRDPLRI-DLV-GLEPLPGQGMEMRFMVKLRVQNPNDEPIEYNGIALDLDVNGQPLASGVSDQTGEVPRFGERVVS--VPLTVSAFSAFRQAWGLSNNAPTQGMPYVVKGKLAGGLFGTVRFSEKGTLDFSGPAVGAPKTKGL |
2R39 Chain:A ((377-487)) | -----------------------------VDPAGMSVIRDRNQLFRVAGEVENTYTLKVINKTQQV-----QEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGADPDKLNSAITTIQFILTDKSNEFTIEVESRFIKKL--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2R39.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 25928 for 667 contacts (38.9/contact) +
2D Compatibility (PS) -11002 + (NN) -3740 + (LL) 2872
1D Compatibility (HY) 6000 + (ID) 200
Total energy: 19858.0 ( 29.77 by residue)
QMean score : 0.019
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