Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSSASLAGKVAFVQGGSRGIGAAIVRRLAAEGASVAFTYVSSADKSRALAAELEGAGASILALHAD---SADAAALVAAVDEAAARFGRIDILVNNAAVLALGSVEELPLADFERTLAINVRSVFVATQAAVKHM--GDGGRVISIGSTNAERMPFAGGATYAMSKSALVGLTKGLARDLGPRGITVNNVQPGPVDTDMNPDDGDFAEALKGLMALPRYARSEEIASFVAYLAG-PEAAYITGASLTIDGGFSA
4DMM Chain:B ((26-266))
-------LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE---RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGE-MGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS--------LLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM
General information:
TITO was launched using:
RESULT:
Template:
4DMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132510 for 2023 contacts (-65.5/contact) +
2D Compatibility (PS) -25720 + (NN) -15758 + (LL) 1088
1D Compatibility (HY) -21600 + (ID) 5050
Total energy: -199550.0 ( -98.64 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_4DMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DMM-query.scw
PDB file :
Tito_Scwrl_4DMM.pdb
: