Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYSRIALFGGFAAAALLAGCSASSGKPGGKDWTRWTCDSKAVIEWRYIDGSKNIVDLRLKDEDDVVHHLEQEPAAVGAFYSD----GRLGFHLENDEGLVYWVETDDLIGRGCKAR
3PYX Chain:B ((282-327))
--------------------------------------------------------------EDDVAHQIY--PQAINAVGSRDTFVGRIRKDLDAEKGIHMWVVSDNLLKGAAWNS
General information:
TITO was launched using:
RESULT:
Template:
3PYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5590 for 195 contacts (28.7/contact) +
2D Compatibility (PS) -4472 + (NN) -1228 + (LL) 3568
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -592.0 ( -3.04 by residue)
QMean score : -0.055
(partial model without unconserved sides chains):
PDB file :
Tito_3PYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PYX-query.scw
PDB file :
Tito_Scwrl_3PYX.pdb
: