Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDLNIPI-PNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
3TKB Chain:A ((7-220))
------------SWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEGFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWREL--
General information:
TITO was launched using:
RESULT:
Template:
3TKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82868 for 1703 contacts (-48.7/contact) +
2D Compatibility (PS) -22785 + (NN) -13416 + (LL) 720
1D Compatibility (HY) -21600 + (ID) 5800
Total energy: -145749.0 ( -85.58 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_3TKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TKB-query.scw
PDB file :
Tito_Scwrl_3TKB.pdb
: