Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTWIVLPVLALTLAGCAGKTAYRENCAD----QLDAAWKELDLAKAEGFAGTVSYSKALTLLTGAKTQQQFEAY----------EGCTSKAEKARFYIRESRAGR
1RKI Chain:A ((1-101))
MKKHIIIKTIPKK-----EEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVNGVP
General information:
TITO was launched using:
RESULT:
Template:
1RKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3784 for 564 contacts (6.7/contact) +
2D Compatibility (PS) -8726 + (NN) 5853 + (LL) 348
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -2641.0 ( -4.68 by residue)
QMean score : 0.186
(partial model without unconserved sides chains):
PDB file :
Tito_1RKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RKI-query.scw
PDB file :
Tito_Scwrl_1RKI.pdb
: