Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPFSERISRLKSSLIREILAAAQRPEVMSFAGGLPAEPMLPK---------VQWEQMPASMGQYGMSEGEPALREAIAAEARALGVPCEASQVLIVSGSQQTLDLASKLFIDPGTEVLLEAPTYLAALQAFQLFGADCVTVPLGAEGPDLVALRQRLERHKPAFAYLIPTFQNPSGVRYSEERRDAVAALLDEFGVTLIEDEPYRELVFDEGRATPLVSRLRKSSW---IYTGTVSKTLLPGLRVGFLIATPDLFPHLLRLKQSADLHTNRVGQWQALQWFGSEAYRQHLAELREFYRVRRDAMQEALLEHFGELAEWNIPEGGLFFWLTLRQPLDTRTLLQPALAADVAFMPGEPFFAEPEQNLGRLRLNFSHVAPERLHEGLRRLAKVVRDAQAAEAA |
2Z1Y Chain:B ((10-391)) | --FGKGAGRIQASTIRELLKLTQRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVAL-QYSPTEGYAPLRAFVA---EWIGVRPE--EVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELL-KEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGE-NTLRLSYATLDREGIAEGVRRLGRALKGLLALV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Z1Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212576 for 3204 contacts (-66.3/contact) +
2D Compatibility (PS) -41634 + (NN) -33498 + (LL) 476
1D Compatibility (HY) -32800 + (ID) 7800
Total energy: -327832.0 ( -102.32 by residue)
QMean score : 0.536
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