Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGHYGAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQSQWFLVKAKDGEARSLDRFDVLKERPDSVLSERTLLPRHGEAATPAARPARRGKSGGKTPMPEWIAPELASLVEQPPR------GEWAYELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAG-LGLQRSWLDGELVVLDEE-G-RPDFQALQNAFEEG------RGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATL----AEDPRDLLASACKLGLEGVIGKRL--GSAYRSR-RSNDWIKLKCQL------RQEFVIVGYTEPKGSR-RHIGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSS-PLAKVPPARETGSVQWVRPQQLCEVSYAQMTR---------------GGIIRQAVFHGLREDKPAREVTGERPAGPPPLRGARKASAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGGELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQWNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQLGRG |
| 2HIV Chain:A ((225-581)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKPQVGIPIRPMLAERLSNPEEILKKMGGNAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGKEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN--DYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNP-KTDSFESVCKVASGFSDEQLDELQKKLMEIKRDVKHPRV----NSKMEPDIWVEPVYVAEIIGSEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HIV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122515 for 2446 contacts (-50.1/contact) +
2D Compatibility (PS) -33272 + (NN) -12344 + (LL) 29100
1D Compatibility (HY) -18400 + (ID) 4200
Total energy: -161631.0 ( -66.08 by residue)
QMean score : 0.441
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