Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------MNAIPLEHGLALASVLFALGLVGLMVRRNILFVLMSLEVMMNAAALAFVVAGSRWGQPDGQVMFILVLSLAAAEASIGLAILLQLYRRFHTLDIDAASEMRG--
2LC4 Chain:A ((1-111))
DLTVRQKGNKVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVK-----GAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTLKERSLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2LC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77038 for 624 contacts (-123.5/contact) +
2D Compatibility (PS) -9667 + (NN) 6384 + (LL) 888
1D Compatibility (HY) 3200 + (ID) 800
Total energy: -77033.0 ( -123.45 by residue)
QMean score : 0.060
(partial model without unconserved sides chains):
PDB file :
Tito_2LC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LC4-query.scw
PDB file :
Tito_Scwrl_2LC4.pdb
: