Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQIRADFDSGNIQVIDASDPRRIRLAIRPDLASQHFQWFHFKVEGMAPATEHCFTLVNAGQSAYSHAWSGYQAVASYDGERWFRVPSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALG-IE-GVERLAVGTSVQGRDIELLRVRRHPDSHLKLWVIAQQHPGEHMAEWFMEGLIERLQRP--DDTEMQRLLEKADLYLVPNMNPDGAFHGN-----LR--------TNAAGQDLNRAWLE------------------PSAERSPEVWFVQQEMKRH-GVDLFLDIHGDEEI-PHVFAAGCEGNPGYTPRLERLEQRFREELMARGEFQIRHGYPRSAPG---QANLALACNFVGQTYDCLAFTIEMPFKDHDDNPEPGTGWSGARSKRLGQDVLSTLAVLVDELR |
| 1PCA Chain:A ((101-399)) | ---------------------------------------------------------------------------------------------------------TFNYATYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTNPNGFAFTHSDNRLWRKTRSKASGSLCVGSDSNRNWDAGFGGAGASSSPCAETYHGKYPNSEVEVKSITDFVKNNGNIKAFISIHSYSQLLLYPYGYKTQSPAD-KSELNQIAKSAVAALKSLY----GTSYKYGSIITVIYQASGGVIDWTYNQGIKYSFSFELRDTG-----RRGFLLPASQIIPTAQETWLALLTIMEHT- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1PCA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -106863 for 2179 contacts (-49.0/contact) +
2D Compatibility (PS) -28142 + (NN) -12420 + (LL) 7460
1D Compatibility (HY) -8000 + (ID) 2000
Total energy: -149965.0 ( -68.82 by residue)
QMean score : 0.543
|
|
|