Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDAGVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAE-GTPKYHSIAGVGSVEQITAKVLSALS
4PZL Chain:C ((26-240))
-RIILLGAPGAGKGTQAKIIEQKYNIAHISTGDMIRETIKSGSALGQELKKVLDAGELVSDEFIIKIVKDRISKNDCNNGFLLDGVPRTIPQAQELDKLGVNIDYIVEVDVADNLLIERITGRRIHPASGRTYHTKFNPPKVADKDDVTGEPLITRTDDNEDTVKQRLSVYHAQTAKLIDFYRNFSSTNTKIPKYIKINGDQAVEKVSQDIFDQLN
General information:
TITO was launched using:
RESULT:
Template:
4PZL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82902 for 1557 contacts (-53.2/contact) +
2D Compatibility (PS) -23096 + (NN) -8871 + (LL) 208
1D Compatibility (HY) -24000 + (ID) 6150
Total energy: -144811.0 ( -93.01 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4PZL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PZL-query.scw
PDB file :
Tito_Scwrl_4PZL.pdb
: