Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFSWSEILLELLAVAVLFFGVHWSLRHAKTLDQASMLPFADDEEVARRVERETGRSRTGCGCPGRCQGDCRHWDKNWPA
1YSM Chain:A ((1-55))
MASVLEELQKDLEEVKVLLEKST----RKRLRDTLTSEKSKIETELKNKMQQKSQKKPE---------------------
General information:
TITO was launched using:
RESULT:
Template:
1YSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2209 for 265 contacts (-8.3/contact) +
2D Compatibility (PS) -5890 + (NN) -3261 + (LL) 312
1D Compatibility (HY) 0 + (ID) 400
Total energy: -11448.0 ( -43.20 by residue)
QMean score : 0.180
(partial model without unconserved sides chains):
PDB file :
Tito_1YSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSM-query.scw
PDB file :
Tito_Scwrl_1YSM.pdb
: