Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLNYFQGALYPWRFCVIVGLLLAMVGAIVWRIVDLHVIDHDFLKGQGDARSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNA--EREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVD-----------------DRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIK-DVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNL------------QPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTL----QIGRYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYG-LSVTAIQLAHAYAALANDGKSVPLSMTRVDRVP-DGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDNLPTATEQQQVNAAPAKGGRG |
| 1VQQ Chain:A ((98-638)) | ------------------------------DGMWKLDWDHSVIIPGMQKDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVS--KKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKT-VKKMDEYLSDFAKKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDD-SNTIAHTLI-EKKKKDGKDIQLTIDAKVQKSIYNNMK-------NDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKF-QITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNA-QISNKNLDNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLTDGMQQVVN-KTHKEDIYRSYANLIGKSGTAELK---------GRQIGWFISYDKD-NPNMMMAINVKDVQDK--GMASYNAKISGKVYDELYENG-------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VQQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -202442 for 4201 contacts (-48.2/contact) +
2D Compatibility (PS) -51802 + (NN) -9289 + (LL) 4556
1D Compatibility (HY) -9200 + (ID) 5150
Total energy: -273327.0 ( -65.06 by residue)
QMean score : 0.442
|
|
|