Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL-SAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPVSQSWAGFAIHRES
3TFO Chain:D ((3-239))
MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGV-MPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSG-QIINIGSIGALSVVPTAAVYCATKFAVRAISDGLR--QESTNIRVTCVNPGVVE---------------------AIALQPADIARAVRQVIEAPQSVDTTEITIRPTA------------
General information:
TITO was launched using:
RESULT:
Template:
3TFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128488 for 1817 contacts (-70.7/contact) +
2D Compatibility (PS) -23404 + (NN) -8562 + (LL) 2108
1D Compatibility (HY) -16800 + (ID) 3750
Total energy: -178896.0 ( -98.46 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_3TFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TFO-query.scw
PDB file :
Tito_Scwrl_3TFO.pdb
: