Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA
4J6W Chain:D ((5-69))
----HSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVR-------------
General information:
TITO was launched using:
RESULT:
Template:
4J6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42525 for 392 contacts (-108.5/contact) +
2D Compatibility (PS) -7083 + (NN) -1780 + (LL) -188
1D Compatibility (HY) -10800 + (ID) 3250
Total energy: -65626.0 ( -167.41 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4J6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J6W-query.scw
PDB file :
Tito_Scwrl_4J6W.pdb
: