Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKRT----VLEMTGLLTNLSDQDLADIAAYFASQK---MSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
1H1O Chain:B ((13-183))
------------------------------SSDCMVCHGMTGDTLYPIVPRLAGQHKSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDSAKITALADYFNAQKPPMQSSGIKHAG-AKEGKAIFNQGVTNEQIPACMECHGSDGQG--AGPFPRLAGQRYGYIIQQLTYFHNGTRVN----TLMNQIAKNITVAQMKDVAAYLSSL-
General information:
TITO was launched using:
RESULT:
Template:
1H1O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31408 for 1248 contacts (-25.2/contact) +
2D Compatibility (PS) -17981 + (NN) -12451 + (LL) 2636
1D Compatibility (HY) -11200 + (ID) 2800
Total energy: -73204.0 ( -58.66 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1H1O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H1O-query.scw
PDB file :
Tito_Scwrl_1H1O.pdb
: