Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATSIYMINLAVFDLLL-VLSLPFKMVLSQ---VQSPFPSLCTLVECLYFVSMYGSVFTICFISMDRFLAIRYPLLVSHL---RSPRKIFGICCTIWVLVWTGSIP-IYSFHGKVEKYMCFHNMSDDTWSAKVFFPLEVFGFLLPMGIMGFCCSRSIHILLGRRDHTQ---------------------------------------------------------------------------------------------------------------------------------------------------------------DWVQQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYFVIKEFRMNIRAHRPSRVQLVLQDTTISRG |
| 3PBL Chain:A ((41-472)) | ----------------------YALSYCALILAIVFGNGLVCMAVLKERA----LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGDPTVCSISNPD------FVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTC--------HVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PBL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -248864 for 1984 contacts (-125.4/contact) +
2D Compatibility (PS) -26139 + (NN) -470 + (LL) 3676
1D Compatibility (HY) -20400 + (ID) 2950
Total energy: -295147.0 ( -148.76 by residue)
QMean score : 0.219
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