Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADK--------------------------VQTTLLFLAVGEFSVGILGNAFIGLVNCMDWVKKRKIA--SIDLILTSLAISRICLLCVILLDCFILVLYPDVYATGKEMRIIDFFWTLTNHLSIWFATCLSIYYFFKIGNFFHPL-FLWMKWRIDRVISWILLGCVVLSVFI--SLPATENLNADFRFCVKAKRKTNLTWSCRVNKTQHASTKLFLNLAT-LLPFCVCLMSFFLLILSLRRHIRRMQLSATGCRDPSTEAHVRALKAVISFLLLFIAYYLSFLIAT----SSYFMPETELAVIFGESIALIYPSSHSFILILGNNKLRHASLKVIWKVMSIL---KGRKFQQHKQI------ |
1U19 Chain:A ((4-349)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQC---SCG-------IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRM-VIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNP----VIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -276610 for 2391 contacts (-115.7/contact) +
2D Compatibility (PS) -29741 + (NN) 3283 + (LL) 624
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -306894.0 ( -128.35 by residue)
QMean score : 0.156
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