Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGQHFIVTGGTSGLGLSIVRKLLENKVHVTLLVRDVDKATRIFEQEL---GKTINVIPCDLNDLKSIQALQF---EDNTSFDGFIYSAGLGYFK---SISDHSFSEMIETYQLNLISFNVLYTVLRPYLTS--NAHIVGISSQAAFSTQANAAHYGASKAGFYALMNALRLES-P-NLHIMTVNVGPIDTPFHQKA-D--PSM--KYAKKMGEIMLDANQLAEDIIYGIKTKQLEINRPKWMHHALKMYQIAPRFFERCFPKLFKNKA
2CFC Chain:A ((2-242))
--SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGE-DATYVNGAALV-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2CFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165727 for 1879 contacts (-88.2/contact) +
2D Compatibility (PS) -24167 + (NN) -10097 + (LL) 2572
1D Compatibility (HY) -7600 + (ID) 2050
Total energy: -207069.0 ( -110.20 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_2CFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFC-query.scw
PDB file :
Tito_Scwrl_2CFC.pdb
: