Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLTHLNEENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINHGVKKGPVLQTAIIAGIMAAKKTSELIPMCHPIMLNGVDIDILEEKETCSFKLYARVKTQAKTGVEMEALMSVSIGLLTIYDMVKVIDKSMTISGVMLEHKSGGKSGDYNAKK
3JQJ Chain:G ((9-154))
---------GRPRMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGILAAKKTADLIPLCHPLPLTGVEVRVELLKAEKRVRIEATVKTKAETGVEMEAMTACAVAALTVYDMLKAASKGLVISQVRLLHKAGGKSGEWRR--
General information:
TITO was launched using:
RESULT:
Template:
3JQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87842 for 1167 contacts (-75.3/contact) +
2D Compatibility (PS) -15534 + (NN) -2018 + (LL) 852
1D Compatibility (HY) -10000 + (ID) 3300
Total energy: -117842.0 ( -100.98 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_3JQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JQJ-query.scw
PDB file :
Tito_Scwrl_3JQJ.pdb
: