Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDNKNIDPCFNPEQFLETQKYKGVVTALIFLLLFFIFLMVAFKKAFFAQANMPTLVMIKQDTATRGTIYSQDNYSLATSQTLFKLGFDTRFLNP-NKEDFFIDFLSIYSNIPKESLKDALNT--------------------------------------------------------------------KGYTILAYNLTPNMAANIRD--LNKKFLAFGVFQNFKDAHDKVWQKQGLNIEVSGVSRHYPYQNSLEPIIGYVQKQEED--------------KLTLTTGKKGVEKSQNNLLEAQQNGIRSGKRDVSFNFIQNHSYTEVERLDGYEVYLSVPLKLQREIETLLDKTKDKLR------AKEILVGIINPKSGEILSLASSNRFDPNAIKTSDYENLNLSVAEKVFEPGSTIKPIVYSLLLDKNLINPKERIDLNHGYYQLGKYTIKDDF--IPSKKAVVEDVLIQSSNVGMIKISKSLN-----------------PEDFYNGLLGYGFSQKTGIDLSLEATGKIPPLSAFKREVLKGSVSYGYGLNATFLQLLRAYAVFSNEGKLTTPYLVQRETAPNGD-IYIP-SP----KPTFQ-VISPKSARKMKETLIKVVR--YGTGKNA-QFEGLYIGGKTGTARVAKNGSYSAESYNSSFFGFAEDERQVFTIGVVILGSHGKEEYYASKIAAPIFKEITEILVRYNYLSPSIAIQNALEKNRLK |
| 3VSK Chain:A ((57-678)) | ---------------------------------------------------NDENI-TVNESVPRGRILDRNGKVLVDNASKMAITYTRGRKTTQSEMLDTAEKLSKLIKMDTKKITERDKKDFWIQLHPKKAKAMMTKEQAMLADGSIKQDQYDKQLLSKIRKSQLDELSSKDLQVLAIFREMNAGTVLDPQMIKNEDVSEKEYAAVSQQLSKLP---------------------GVNT-SMDWDRKYPYGDTLRGIFGDVSTPAEGIPKELTEHYLSKGYSRNDRVGKSYLEYQYEDVLRG-KKKEMKYTTDKSGKVTSSEV--LNPGARGQDLKLTIDIDLQKEVEALLDKQIKKLRSQGAKDMDNAMMVVQNPKNGDILALAGKQINKSGKM-----TDYDIGTFTSQFAVGSSVKGGTLLAGYQNKAIKVGETMVDEPLHFQ-GGLTKRSYFNKNGHVSINDKQALMHSSNVYMFKTALKLAGDPYYSGMALPSDISSPAQKLRRGLNQVGLGVKTGIDLPNETRGQIEPL-TN-NPGNYLDLSIGQYDTYTPLQLSQYVSTIANDGYRIQPHIGLTIHESTNKDEVGPLKKKINGTVLNKVNNTEKEIKQIQEGFKMAFNDKDGTGYVSFKDTVVPTAGKTGTAEVFQ-----EPRVNSTYIGYAPIDDPKLAFSIVYTNQPV-P--PPWLTGGDLGRDVINYYFK-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VSK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102458 for 4172 contacts (-24.6/contact) +
2D Compatibility (PS) -52008 + (NN) -16254 + (LL) 8868
1D Compatibility (HY) -6000 + (ID) 5250
Total energy: -173102.0 ( -41.49 by residue)
QMean score : 0.351
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