Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNNPKPCEWKSNELSRGYIADYKAFNFVDGEGVRCSLYVSGCPFHCEGCYNKAAQSFKYGKPYTKELEDDILKDIGHESVQGLTLLG--GE-PFLNTATCLSIVKRIRATYGETKDIWSWTGYTWDEMMQETADKLELLSLIDVLVDGRFEQKLFDPNLAFRGSSNQRIIDVQKSLAAGEVVLYEL
2R8W Chain:A ((51-98))
-------------------------------------------------------------RVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAAT-----------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2R8W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18200 for 230 contacts (-79.1/contact) +
2D Compatibility (PS) -4680 + (NN) -1643 + (LL) 8204
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -19019.0 ( -82.69 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_2R8W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R8W-query.scw
PDB file :
Tito_Scwrl_2R8W.pdb
: