Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceLHKLSVVIA-----VYNVSEYIEAC--LTSVLEQNYKNVELIIVNDGSTDDTFQKVEKLVDGHTNVILIDQENQGVSAVRNNGVKAATGDYLGFVDGDDIIAKDMFQK-------MMDS----FEMSDADMVTIG---VARLSGDK-----------VYPSTLHERYMVEK-------KEATTIEETPALLYDTTSWNKVFKKSFWDKHHLEFPE-----GQMYEDIALMIPAFLYAEKVNIIPDVGYYWRSREGGAKSITQRRNDIAMVNDRLLALKKVNQVLNEKNI-----QGDLRYQNERKNFEIDLFSMIEWAFLAPKDYYLALQ----PLIKNYVEQEMKTT------ALNDIP-KEKKRLFK----ALLANNRPAFLLNSYIYFGKKAVKKITK--------
4MND Chain:A ((40-457))LMKAVILAAGLGGGVPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEKG-NGYSLLVAKNHVEDRFILTMGDHVYSQQFIEKAVRGEGVIADREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDDSIFEHAEKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRALVSAAVGDGFISRKINRKISTRISAAIVNKVNPNQMTLISFLVGAFSALASFFSIPLAGLLYQFSSILDGCDGEIARASLKMSKKGGYVDSILDRFVDFLFLAIIALLYPKTATVAMFAIFGSVMVSYTSEKYKAEFGESIRVLNYIPGKRDERIFLIMIFCLLSAISLQWIFWMFLFVAAISLTRVVVTLLAVLVS


General information:
TITO was launched using:
RESULT:

Template: 4MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16048 for 2483 contacts (-6.5/contact) +
2D Compatibility (PS) -36195 + (NN) -14101 + (LL) 192
1D Compatibility (HY) -15200 + (ID) 2950
Total energy: -84302.0 ( -33.95 by residue)
QMean score : 0.179

(partial model without unconserved sides chains):
PDB file : Tito_4MND.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MND-query.scw
PDB file : Tito_Scwrl_4MND.pdb: