Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LHKLSVVIA-----VYNVSEYIEAC--LTSVLEQNYKNVELIIVNDGSTDDTFQKVEKLVDGHTNVILIDQENQGVSAVRNNGVKAATGDYLGFVDGDDIIAKDMFQK-------MMDS----FEMSDADMVTIG---VARLSGDK-----------VYPSTLHERYMVEK-------KEATTIEETPALLYDTTSWNKVFKKSFWDKHHLEFPE-----GQMYEDIALMIPAFLYAEKVNIIPDVGYYWRSREGGAKSITQRRNDIAMVNDRLLALKKVNQVLNEKNI-----QGDLRYQNERKNFEIDLFSMIEWAFLAPKDYYLALQ----PLIKNYVEQEMKTT------ALNDIP-KEKKRLFK----ALLANNRPAFLLNSYIYFGKKAVKKITK-------- |
4MND Chain:A ((40-457)) | LMKAVILAAGLGGGVPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEKG-NGYSLLVAKNHVEDRFILTMGDHVYSQQFIEKAVRGEGVIADREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDDSIFEHAEKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRALVSAAVGDGFISRKINRKISTRISAAIVNKVNPNQMTLISFLVGAFSALASFFSIPLAGLLYQFSSILDGCDGEIARASLKMSKKGGYVDSILDRFVDFLFLAIIALLYPKTATVAMFAIFGSVMVSYTSEKYKAEFGESIRVLNYIPGKRDERIFLIMIFCLLSAISLQWIFWMFLFVAAISLTRVVVTLLAVLVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16048 for 2483 contacts (-6.5/contact) +
2D Compatibility (PS) -36195 + (NN) -14101 + (LL) 192
1D Compatibility (HY) -15200 + (ID) 2950
Total energy: -84302.0 ( -33.95 by residue)
QMean score : 0.179
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