Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADISKELIEQLVKQVVLEKMGQSSKHVDPSGILSVKLPVVKVSEEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEMKDT---TFDWFLDYDEVDYVIEGRLDVVIDGRTVSAGPGEIIFIPKGSQIKFSVTG--EARFIYVTYPADWQS
1V70 Chain:A ((25-104))
--------------------------------------------------------------------SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPR----
General information:
TITO was launched using:
RESULT:
Template:
1V70.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36889 for 497 contacts (-74.2/contact) +
2D Compatibility (PS) -8410 + (NN) -3837 + (LL) 5124
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -47712.0 ( -96.00 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1V70.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V70-query.scw
PDB file :
Tito_Scwrl_1V70.pdb
: