Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTPKKILSDMTNGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVS-KTSTGAVEHVPIARVT--NLSQTLDTLKDKDFWIFGTDMNG--TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL
2HA8 Chain:A ((24-175))
---------------------------------------------------------------------------------------------------ISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSL--QCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQL
General information:
TITO was launched using:
RESULT:
Template:
2HA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107254 for 1144 contacts (-93.8/contact) +
2D Compatibility (PS) -16457 + (NN) -9822 + (LL) 6736
1D Compatibility (HY) -10400 + (ID) 1900
Total energy: -139097.0 ( -121.59 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_2HA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HA8-query.scw
PDB file :
Tito_Scwrl_2HA8.pdb
: