Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYKTIKSDGIVEEEIKKSRFICHLKRVESEEEGRNYITQIKKAHYKANHSCSAMVI---GEKGDIKRSSDDGEPSGTAGIPMLTVL------------EKQGLTNVVAV-------------VTRYFGGIKLGAGG----LIRAYSGSVANTIKEIGVVEVKEQIGIRIQLTYPQYQTFDNFLKEHHLQEFETEFL--EAVTCKIYVDPKEFEHTITNLTEFYQGKALLTEEGSQIVEIPFKAETDK
1LM7 Chain:A ((2209-2448))
-SFQGIRQ-PVTVTELVDSGILRPSTVNELESGSYDEVGERIKDFLQGSSCIAGIYNETTKQKLGIYEAMKIGLVRPGTALELLEAQAATGFIVDPVSNLRLPVEEAYKRGLVGIEFKEKLLSAERAVTGYNDPETGNIISLFQAMNKELIEKGHGIRLLEAQIATGGIIDPKESHRLPVDIAYKRGYFNEELSEILSDPSDDTKGFFDPNT--EENLTYLQLKERCIKDEETGLCLLPLKE------
General information:
TITO was launched using:
RESULT:
Template:
1LM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16816 for 1474 contacts (-11.4/contact) +
2D Compatibility (PS) -21839 + (NN) -3778 + (LL) 720
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -46363.0 ( -31.45 by residue)
QMean score : 0.167
(partial model without unconserved sides chains):
PDB file :
Tito_1LM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LM7-query.scw
PDB file :
Tito_Scwrl_1LM7.pdb
: